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FPGA Implementation of the FM-Index String Matching algorithm

Jezik EngleskiEngleski
Knjiga Meki uvez
Knjiga FPGA Implementation of the FM-Index String Matching algorithm Edward Bryann Fernandez
Libristo kod: 06936667
Nakladnici Scholars' Press, studeni 2013
This book discusses the research processes of developing a hardware implementation of a string match... Cijeli opis
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This book discusses the research processes of developing a hardware implementation of a string matching algorithm. The first phase of the research is qualifying the appropriate algorithm for the application of DNA sequence matching. The second phase is re-inventing the algorithm to make it suitable for a hardware implementation. The third phase is implementing the chosen algorithm using FPGAs. The last phase is measuring performance using real data sets for comparison to other known tools. Our implementation shows a real time speedup up of up to 70x against BOWTIE, a known tool used in sequence matching.

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Informacije o knjizi

Puni naziv FPGA Implementation of the FM-Index String Matching algorithm
Autor Edward Bryann Fernandez
Jezik Engleski
Uvez Knjiga - Meki uvez
Datum izdanja 2013
Broj stranica 140
EAN 9783639702781
ISBN 3639702786
Libristo kod 06936667
Nakladnici Scholars' Press
Težina 213
Dimenzije 152 x 229 x 8

Kategorija

Mathematics & Science > Biology, life sciences > Life sciences: general issues > Genetics (non-medical)
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